#================================================== #All numbers are READ count #================================================== Total records: 90514095 QC failed: 0 Optical/PCR duplicate: 28300615 Non primary hits 4396631 Unmapped reads: 7731602 mapq < mapq_cut (non-unique): 1932724 mapq >= mapq_cut (unique): 48152523 Read-1: 24079294 Read-2: 24073229 Reads map to '+': 24076197 Reads map to '-': 24076326 Non-splice reads: 33552801 Splice reads: 14599722 Reads mapped in proper pairs: 48142660 Proper-paired reads map to different chrom:0