#================================================== #All numbers are READ count #================================================== Total records: 84173656 QC failed: 0 Optical/PCR duplicate: 29223397 Non primary hits 4697426 Unmapped reads: 4679217 mapq < mapq_cut (non-unique): 1790372 mapq >= mapq_cut (unique): 43783244 Read-1: 21895356 Read-2: 21887888 Reads map to '+': 21891543 Reads map to '-': 21891701 Non-splice reads: 32021476 Splice reads: 11761768 Reads mapped in proper pairs: 43773376 Proper-paired reads map to different chrom:0