#================================================== #All numbers are READ count #================================================== Total records: 81673128 QC failed: 0 Optical/PCR duplicate: 30821834 Non primary hits 5742690 Unmapped reads: 1950284 mapq < mapq_cut (non-unique): 1888735 mapq >= mapq_cut (unique): 41269585 Read-1: 20636891 Read-2: 20632694 Reads map to '+': 20634751 Reads map to '-': 20634834 Non-splice reads: 28147365 Splice reads: 13122220 Reads mapped in proper pairs: 41263422 Proper-paired reads map to different chrom:0