#================================================== #All numbers are READ count #================================================== Total records: 99232142 QC failed: 0 Optical/PCR duplicate: 50230498 Non primary hits 9099522 Unmapped reads: 3586752 mapq < mapq_cut (non-unique): 1764517 mapq >= mapq_cut (unique): 34550853 Read-1: 17277317 Read-2: 17273536 Reads map to '+': 17275384 Reads map to '-': 17275469 Non-splice reads: 26621057 Splice reads: 7929796 Reads mapped in proper pairs: 34543288 Proper-paired reads map to different chrom:0