#================================================== #All numbers are READ count #================================================== Total records: 97082987 QC failed: 0 Optical/PCR duplicate: 36990200 Non primary hits 6504159 Unmapped reads: 2723408 mapq < mapq_cut (non-unique): 2172605 mapq >= mapq_cut (unique): 48692615 Read-1: 24349795 Read-2: 24342820 Reads map to '+': 24346365 Reads map to '-': 24346250 Non-splice reads: 34686025 Splice reads: 14006590 Reads mapped in proper pairs: 48682452 Proper-paired reads map to different chrom:0