#================================================== #All numbers are READ count #================================================== Total records: 86850361 QC failed: 0 Optical/PCR duplicate: 30519420 Non primary hits 5176607 Unmapped reads: 2399353 mapq < mapq_cut (non-unique): 1910894 mapq >= mapq_cut (unique): 46844087 Read-1: 23424182 Read-2: 23419905 Reads map to '+': 23422071 Reads map to '-': 23422016 Non-splice reads: 33330767 Splice reads: 13513320 Reads mapped in proper pairs: 46837454 Proper-paired reads map to different chrom:0