#================================================== #All numbers are READ count #================================================== Total records: 53592538 QC failed: 0 Optical/PCR duplicate: 30405223 Non primary hits 3706078 Unmapped reads: 1365875 mapq < mapq_cut (non-unique): 843838 mapq >= mapq_cut (unique): 17271524 Read-1: 8636519 Read-2: 8635005 Reads map to '+': 8635744 Reads map to '-': 8635780 Non-splice reads: 12838172 Splice reads: 4433352 Reads mapped in proper pairs: 17267456 Proper-paired reads map to different chrom:0