#================================================== #All numbers are READ count #================================================== Total records: 69043314 QC failed: 0 Optical/PCR duplicate: 22956582 Non primary hits 3800012 Unmapped reads: 3049015 mapq < mapq_cut (non-unique): 1583813 mapq >= mapq_cut (unique): 37653892 Read-1: 18829197 Read-2: 18824695 Reads map to '+': 18826914 Reads map to '-': 18826978 Non-splice reads: 26733748 Splice reads: 10920144 Reads mapped in proper pairs: 37646906 Proper-paired reads map to different chrom:0