#================================================== #All numbers are READ count #================================================== Total records: 103003216 QC failed: 0 Optical/PCR duplicate: 52507353 Non primary hits 6246834 Unmapped reads: 2987145 mapq < mapq_cut (non-unique): 1904145 mapq >= mapq_cut (unique): 39357739 Read-1: 19682345 Read-2: 19675394 Reads map to '+': 19678917 Reads map to '-': 19678822 Non-splice reads: 26064015 Splice reads: 13293724 Reads mapped in proper pairs: 39341060 Proper-paired reads map to different chrom:0