#================================================== #All numbers are READ count #================================================== Total records: 89987971 QC failed: 0 Optical/PCR duplicate: 76662398 Non primary hits 6193201 Unmapped reads: 1322076 mapq < mapq_cut (non-unique): 392628 mapq >= mapq_cut (unique): 5417668 Read-1: 2709761 Read-2: 2707907 Reads map to '+': 2708835 Reads map to '-': 2708833 Non-splice reads: 3844586 Splice reads: 1573082 Reads mapped in proper pairs: 5413966 Proper-paired reads map to different chrom:0