#================================================== #All numbers are READ count #================================================== Total records: 188604623 QC failed: 0 Optical/PCR duplicate: 120768796 Non primary hits 10819985 Unmapped reads: 6300089 mapq < mapq_cut (non-unique): 2157084 mapq >= mapq_cut (unique): 48558669 Read-1: 24285333 Read-2: 24273336 Reads map to '+': 24279185 Reads map to '-': 24279484 Non-splice reads: 31256932 Splice reads: 17301737 Reads mapped in proper pairs: 48543458 Proper-paired reads map to different chrom:0