#================================================== #All numbers are READ count #================================================== Total records: 69273576 QC failed: 0 Optical/PCR duplicate: 21379575 Non primary hits 3980178 Unmapped reads: 2198286 mapq < mapq_cut (non-unique): 1702417 mapq >= mapq_cut (unique): 40013120 Read-1: 20008364 Read-2: 20004756 Reads map to '+': 20006497 Reads map to '-': 20006623 Non-splice reads: 27537434 Splice reads: 12475686 Reads mapped in proper pairs: 40006694 Proper-paired reads map to different chrom:0