#================================================== #All numbers are READ count #================================================== Total records: 115601134 QC failed: 0 Optical/PCR duplicate: 54443730 Non primary hits 7730584 Unmapped reads: 6529587 mapq < mapq_cut (non-unique): 2115287 mapq >= mapq_cut (unique): 44781946 Read-1: 22393258 Read-2: 22388688 Reads map to '+': 22390964 Reads map to '-': 22390982 Non-splice reads: 31921230 Splice reads: 12860716 Reads mapped in proper pairs: 44772704 Proper-paired reads map to different chrom:0