#================================================== #All numbers are READ count #================================================== Total records: 94520612 QC failed: 0 Optical/PCR duplicate: 24157011 Non primary hits 4422264 Unmapped reads: 18366931 mapq < mapq_cut (non-unique): 1954428 mapq >= mapq_cut (unique): 45619978 Read-1: 22815924 Read-2: 22804054 Reads map to '+': 22809704 Reads map to '-': 22810274 Non-splice reads: 32011187 Splice reads: 13608791 Reads mapped in proper pairs: 45602392 Proper-paired reads map to different chrom:0