#================================================== #All numbers are READ count #================================================== Total records: 103464853 QC failed: 0 Optical/PCR duplicate: 48140260 Non primary hits 7526953 Unmapped reads: 3279928 mapq < mapq_cut (non-unique): 2023326 mapq >= mapq_cut (unique): 42494386 Read-1: 21248833 Read-2: 21245553 Reads map to '+': 21247050 Reads map to '-': 21247336 Non-splice reads: 31391078 Splice reads: 11103308 Reads mapped in proper pairs: 42487478 Proper-paired reads map to different chrom:0