#================================================== #All numbers are READ count #================================================== Total records: 83002678 QC failed: 0 Optical/PCR duplicate: 33310566 Non primary hits 4392158 Unmapped reads: 4665224 mapq < mapq_cut (non-unique): 1621035 mapq >= mapq_cut (unique): 39013695 Read-1: 19508466 Read-2: 19505229 Reads map to '+': 19506796 Reads map to '-': 19506899 Non-splice reads: 27716793 Splice reads: 11296902 Reads mapped in proper pairs: 39008502 Proper-paired reads map to different chrom:0