#================================================== #All numbers are READ count #================================================== Total records: 115272952 QC failed: 0 Optical/PCR duplicate: 57125871 Non primary hits 14990778 Unmapped reads: 2921695 mapq < mapq_cut (non-unique): 2441218 mapq >= mapq_cut (unique): 37793390 Read-1: 18901008 Read-2: 18892382 Reads map to '+': 18896627 Reads map to '-': 18896763 Non-splice reads: 24484259 Splice reads: 13309131 Reads mapped in proper pairs: 37779142 Proper-paired reads map to different chrom:0