#================================================== #All numbers are READ count #================================================== Total records: 169473373 QC failed: 0 Optical/PCR duplicate: 76745237 Non primary hits 8368069 Unmapped reads: 6855957 mapq < mapq_cut (non-unique): 2950746 mapq >= mapq_cut (unique): 74553364 Read-1: 37281714 Read-2: 37271650 Reads map to '+': 37276673 Reads map to '-': 37276691 Non-splice reads: 50008473 Splice reads: 24544891 Reads mapped in proper pairs: 74539566 Proper-paired reads map to different chrom:0