#================================================== #All numbers are READ count #================================================== Total records: 101038287 QC failed: 0 Optical/PCR duplicate: 45395669 Non primary hits 5828753 Unmapped reads: 2357498 mapq < mapq_cut (non-unique): 1899223 mapq >= mapq_cut (unique): 45557144 Read-1: 22779458 Read-2: 22777686 Reads map to '+': 22778503 Reads map to '-': 22778641 Non-splice reads: 32662331 Splice reads: 12894813 Reads mapped in proper pairs: 45551444 Proper-paired reads map to different chrom:0