#================================================== #All numbers are READ count #================================================== Total records: 94613700 QC failed: 0 Optical/PCR duplicate: 29101137 Non primary hits 4747684 Unmapped reads: 9884664 mapq < mapq_cut (non-unique): 2002786 mapq >= mapq_cut (unique): 48877429 Read-1: 24443153 Read-2: 24434276 Reads map to '+': 24438743 Reads map to '-': 24438686 Non-splice reads: 34754767 Splice reads: 14122662 Reads mapped in proper pairs: 48864892 Proper-paired reads map to different chrom:0