#================================================== #All numbers are READ count #================================================== Total records: 80178290 QC failed: 0 Optical/PCR duplicate: 29205057 Non primary hits 4475490 Unmapped reads: 4749257 mapq < mapq_cut (non-unique): 1683479 mapq >= mapq_cut (unique): 40065007 Read-1: 20034684 Read-2: 20030323 Reads map to '+': 20032447 Reads map to '-': 20032560 Non-splice reads: 28264203 Splice reads: 11800804 Reads mapped in proper pairs: 40058410 Proper-paired reads map to different chrom:0