#================================================== #All numbers are READ count #================================================== Total records: 103372249 QC failed: 0 Optical/PCR duplicate: 44050032 Non primary hits 6593291 Unmapped reads: 3948711 mapq < mapq_cut (non-unique): 2137129 mapq >= mapq_cut (unique): 46643086 Read-1: 23323853 Read-2: 23319233 Reads map to '+': 23321583 Reads map to '-': 23321503 Non-splice reads: 33507847 Splice reads: 13135239 Reads mapped in proper pairs: 46633240 Proper-paired reads map to different chrom:0