#================================================== #All numbers are READ count #================================================== Total records: 90610895 QC failed: 0 Optical/PCR duplicate: 33848447 Non primary hits 4989613 Unmapped reads: 5957627 mapq < mapq_cut (non-unique): 1916122 mapq >= mapq_cut (unique): 43899086 Read-1: 21952121 Read-2: 21946965 Reads map to '+': 21949454 Reads map to '-': 21949632 Non-splice reads: 30629375 Splice reads: 13269711 Reads mapped in proper pairs: 43891392 Proper-paired reads map to different chrom:0