#================================================== #All numbers are READ count #================================================== Total records: 110905386 QC failed: 0 Optical/PCR duplicate: 35164456 Non primary hits 5528742 Unmapped reads: 11403601 mapq < mapq_cut (non-unique): 2339961 mapq >= mapq_cut (unique): 56468626 Read-1: 28238270 Read-2: 28230356 Reads map to '+': 28234315 Reads map to '-': 28234311 Non-splice reads: 40215648 Splice reads: 16252978 Reads mapped in proper pairs: 56456252 Proper-paired reads map to different chrom:0