#================================================== #All numbers are READ count #================================================== Total records: 82809609 QC failed: 0 Optical/PCR duplicate: 30465870 Non primary hits 5516401 Unmapped reads: 3749026 mapq < mapq_cut (non-unique): 1882578 mapq >= mapq_cut (unique): 41195734 Read-1: 20600221 Read-2: 20595513 Reads map to '+': 20597837 Reads map to '-': 20597897 Non-splice reads: 27817345 Splice reads: 13378389 Reads mapped in proper pairs: 41188402 Proper-paired reads map to different chrom:0