#================================================== #All numbers are READ count #================================================== Total records: 122959774 QC failed: 0 Optical/PCR duplicate: 49391550 Non primary hits 8163584 Unmapped reads: 2411982 mapq < mapq_cut (non-unique): 2896988 mapq >= mapq_cut (unique): 60095670 Read-1: 30054278 Read-2: 30041392 Reads map to '+': 30047914 Reads map to '-': 30047756 Non-splice reads: 39311653 Splice reads: 20784017 Reads mapped in proper pairs: 60072022 Proper-paired reads map to different chrom:0