#================================================== #All numbers are READ count #================================================== Total records: 101010068 QC failed: 0 Optical/PCR duplicate: 51783520 Non primary hits 8210412 Unmapped reads: 3036901 mapq < mapq_cut (non-unique): 1953025 mapq >= mapq_cut (unique): 36026210 Read-1: 18013897 Read-2: 18012313 Reads map to '+': 18013080 Reads map to '-': 18013130 Non-splice reads: 25432987 Splice reads: 10593223 Reads mapped in proper pairs: 36021688 Proper-paired reads map to different chrom:0