#================================================== #All numbers are READ count #================================================== Total records: 83458539 QC failed: 0 Optical/PCR duplicate: 29871492 Non primary hits 5083097 Unmapped reads: 3748421 mapq < mapq_cut (non-unique): 1877555 mapq >= mapq_cut (unique): 42877974 Read-1: 21441368 Read-2: 21436606 Reads map to '+': 21438898 Reads map to '-': 21439076 Non-splice reads: 30197527 Splice reads: 12680447 Reads mapped in proper pairs: 42870260 Proper-paired reads map to different chrom:0