#================================================== #All numbers are READ count #================================================== Total records: 83430113 QC failed: 0 Optical/PCR duplicate: 25542694 Non primary hits 5240961 Unmapped reads: 910395 mapq < mapq_cut (non-unique): 2137064 mapq >= mapq_cut (unique): 49598999 Read-1: 24800814 Read-2: 24798185 Reads map to '+': 24799513 Reads map to '-': 24799486 Non-splice reads: 34550356 Splice reads: 15048643 Reads mapped in proper pairs: 49593528 Proper-paired reads map to different chrom:0