#================================================== #All numbers are READ count #================================================== Total records: 115324028 QC failed: 0 Optical/PCR duplicate: 44360387 Non primary hits 6464802 Unmapped reads: 5357543 mapq < mapq_cut (non-unique): 2397175 mapq >= mapq_cut (unique): 56744121 Read-1: 28375131 Read-2: 28368990 Reads map to '+': 28371981 Reads map to '-': 28372140 Non-splice reads: 40276975 Splice reads: 16467146 Reads mapped in proper pairs: 56734158 Proper-paired reads map to different chrom:0