#================================================== #All numbers are READ count #================================================== Total records: 80805992 QC failed: 0 Optical/PCR duplicate: 37813838 Non primary hits 4507994 Unmapped reads: 4645325 mapq < mapq_cut (non-unique): 1305613 mapq >= mapq_cut (unique): 32533222 Read-1: 16269286 Read-2: 16263936 Reads map to '+': 16266617 Reads map to '-': 16266605 Non-splice reads: 23539051 Splice reads: 8994171 Reads mapped in proper pairs: 32526136 Proper-paired reads map to different chrom:0