#================================================== #All numbers are READ count #================================================== Total records: 93900037 QC failed: 0 Optical/PCR duplicate: 32262516 Non primary hits 5475873 Unmapped reads: 3313272 mapq < mapq_cut (non-unique): 2117257 mapq >= mapq_cut (unique): 50731119 Read-1: 25367846 Read-2: 25363273 Reads map to '+': 25365486 Reads map to '-': 25365633 Non-splice reads: 35259555 Splice reads: 15471564 Reads mapped in proper pairs: 50723984 Proper-paired reads map to different chrom:0