#================================================== #All numbers are READ count #================================================== Total records: 105262495 QC failed: 0 Optical/PCR duplicate: 38526625 Non primary hits 5866625 Unmapped reads: 17870614 mapq < mapq_cut (non-unique): 1994321 mapq >= mapq_cut (unique): 41004310 Read-1: 20516930 Read-2: 20487380 Reads map to '+': 20502019 Reads map to '-': 20502291 Non-splice reads: 27401032 Splice reads: 13603278 Reads mapped in proper pairs: 40966798 Proper-paired reads map to different chrom:0