#================================================== #All numbers are READ count #================================================== Total records: 87882224 QC failed: 0 Optical/PCR duplicate: 29630134 Non primary hits 4854666 Unmapped reads: 5575590 mapq < mapq_cut (non-unique): 1983036 mapq >= mapq_cut (unique): 45838798 Read-1: 22921624 Read-2: 22917174 Reads map to '+': 22919383 Reads map to '-': 22919415 Non-splice reads: 31702127 Splice reads: 14136671 Reads mapped in proper pairs: 45831674 Proper-paired reads map to different chrom:0