#================================================== #All numbers are READ count #================================================== Total records: 103794310 QC failed: 0 Optical/PCR duplicate: 44753002 Non primary hits 6921510 Unmapped reads: 1311686 mapq < mapq_cut (non-unique): 2433779 mapq >= mapq_cut (unique): 48374333 Read-1: 24189739 Read-2: 24184594 Reads map to '+': 24187158 Reads map to '-': 24187175 Non-splice reads: 30618357 Splice reads: 17755976 Reads mapped in proper pairs: 48360170 Proper-paired reads map to different chrom:0