#================================================== #All numbers are READ count #================================================== Total records: 95413838 QC failed: 0 Optical/PCR duplicate: 46796713 Non primary hits 5099054 Unmapped reads: 1869158 mapq < mapq_cut (non-unique): 1770633 mapq >= mapq_cut (unique): 39878280 Read-1: 19940359 Read-2: 19937921 Reads map to '+': 19939174 Reads map to '-': 19939106 Non-splice reads: 27111732 Splice reads: 12766548 Reads mapped in proper pairs: 39873674 Proper-paired reads map to different chrom:0