#================================================== #All numbers are READ count #================================================== Total records: 96276348 QC failed: 0 Optical/PCR duplicate: 52083692 Non primary hits 5733884 Unmapped reads: 1856844 mapq < mapq_cut (non-unique): 1711818 mapq >= mapq_cut (unique): 34890110 Read-1: 17447511 Read-2: 17442599 Reads map to '+': 17445124 Reads map to '-': 17444986 Non-splice reads: 22606376 Splice reads: 12283734 Reads mapped in proper pairs: 34876678 Proper-paired reads map to different chrom:0