#================================================== #All numbers are READ count #================================================== Total records: 104165953 QC failed: 0 Optical/PCR duplicate: 35097981 Non primary hits 5033127 Unmapped reads: 9582926 mapq < mapq_cut (non-unique): 2157949 mapq >= mapq_cut (unique): 52293970 Read-1: 26150184 Read-2: 26143786 Reads map to '+': 26147022 Reads map to '-': 26146948 Non-splice reads: 35604810 Splice reads: 16689160 Reads mapped in proper pairs: 52284256 Proper-paired reads map to different chrom:0