#================================================== #All numbers are READ count #================================================== Total records: 86427530 QC failed: 0 Optical/PCR duplicate: 24175676 Non primary hits 5072820 Unmapped reads: 5145444 mapq < mapq_cut (non-unique): 2179898 mapq >= mapq_cut (unique): 49853692 Read-1: 24930196 Read-2: 24923496 Reads map to '+': 24926778 Reads map to '-': 24926914 Non-splice reads: 33885893 Splice reads: 15967799 Reads mapped in proper pairs: 49844288 Proper-paired reads map to different chrom:0