#================================================== #All numbers are READ count #================================================== Total records: 97764775 QC failed: 0 Optical/PCR duplicate: 41023760 Non primary hits 6989405 Unmapped reads: 2631765 mapq < mapq_cut (non-unique): 2314155 mapq >= mapq_cut (unique): 44805690 Read-1: 22406708 Read-2: 22398982 Reads map to '+': 22402879 Reads map to '-': 22402811 Non-splice reads: 29780128 Splice reads: 15025562 Reads mapped in proper pairs: 44787104 Proper-paired reads map to different chrom:0