#================================================== #All numbers are READ count #================================================== Total records: 80109293 QC failed: 0 Optical/PCR duplicate: 26403454 Non primary hits 4496819 Unmapped reads: 2743845 mapq < mapq_cut (non-unique): 1812148 mapq >= mapq_cut (unique): 44653027 Read-1: 22328167 Read-2: 22324860 Reads map to '+': 22326488 Reads map to '-': 22326539 Non-splice reads: 31572271 Splice reads: 13080756 Reads mapped in proper pairs: 44647406 Proper-paired reads map to different chrom:0