#================================================== #All numbers are READ count #================================================== Total records: 76796478 QC failed: 0 Optical/PCR duplicate: 23575349 Non primary hits 4679340 Unmapped reads: 2842106 mapq < mapq_cut (non-unique): 1888291 mapq >= mapq_cut (unique): 43811392 Read-1: 21908298 Read-2: 21903094 Reads map to '+': 21905628 Reads map to '-': 21905764 Non-splice reads: 30854363 Splice reads: 12957029 Reads mapped in proper pairs: 43803952 Proper-paired reads map to different chrom:0