#================================================== #All numbers are READ count #================================================== Total records: 96743451 QC failed: 0 Optical/PCR duplicate: 42316838 Non primary hits 7297957 Unmapped reads: 4287993 mapq < mapq_cut (non-unique): 2030126 mapq >= mapq_cut (unique): 40810537 Read-1: 20407333 Read-2: 20403204 Reads map to '+': 20405253 Reads map to '-': 20405284 Non-splice reads: 30623653 Splice reads: 10186884 Reads mapped in proper pairs: 40800226 Proper-paired reads map to different chrom:0