#================================================== #All numbers are READ count #================================================== Total records: 149380725 QC failed: 0 Optical/PCR duplicate: 79086180 Non primary hits 10937471 Unmapped reads: 6626484 mapq < mapq_cut (non-unique): 2328329 mapq >= mapq_cut (unique): 50402261 Read-1: 25202740 Read-2: 25199521 Reads map to '+': 25201108 Reads map to '-': 25201153 Non-splice reads: 35931192 Splice reads: 14471069 Reads mapped in proper pairs: 50395396 Proper-paired reads map to different chrom:0