#================================================== #All numbers are READ count #================================================== Total records: 40631083 QC failed: 0 Optical/PCR duplicate: 11633861 Non primary hits 2369659 Unmapped reads: 1687854 mapq < mapq_cut (non-unique): 1052471 mapq >= mapq_cut (unique): 23887238 Read-1: 11944825 Read-2: 11942413 Reads map to '+': 11943587 Reads map to '-': 11943651 Non-splice reads: 16695705 Splice reads: 7191533 Reads mapped in proper pairs: 23883096 Proper-paired reads map to different chrom:0