#================================================== #All numbers are READ count #================================================== Total records: 98586861 QC failed: 0 Optical/PCR duplicate: 43945490 Non primary hits 6928509 Unmapped reads: 5187670 mapq < mapq_cut (non-unique): 1947098 mapq >= mapq_cut (unique): 40578094 Read-1: 20290587 Read-2: 20287507 Reads map to '+': 20289056 Reads map to '-': 20289038 Non-splice reads: 29243996 Splice reads: 11334098 Reads mapped in proper pairs: 40569836 Proper-paired reads map to different chrom:0