#================================================== #All numbers are READ count #================================================== Total records: 85123410 QC failed: 0 Optical/PCR duplicate: 26354002 Non primary hits 4772856 Unmapped reads: 3673401 mapq < mapq_cut (non-unique): 1995268 mapq >= mapq_cut (unique): 48327883 Read-1: 24168757 Read-2: 24159126 Reads map to '+': 24163810 Reads map to '-': 24164073 Non-splice reads: 33425649 Splice reads: 14902234 Reads mapped in proper pairs: 48312130 Proper-paired reads map to different chrom:0