#================================================== #All numbers are READ count #================================================== Total records: 98800470 QC failed: 0 Optical/PCR duplicate: 49829524 Non primary hits 7320536 Unmapped reads: 3592109 mapq < mapq_cut (non-unique): 1750281 mapq >= mapq_cut (unique): 36308020 Read-1: 18155155 Read-2: 18152865 Reads map to '+': 18153966 Reads map to '-': 18154054 Non-splice reads: 27072392 Splice reads: 9235628 Reads mapped in proper pairs: 36299350 Proper-paired reads map to different chrom:0