#================================================== #All numbers are READ count #================================================== Total records: 69704669 QC failed: 0 Optical/PCR duplicate: 48189799 Non primary hits 5075543 Unmapped reads: 1485008 mapq < mapq_cut (non-unique): 852452 mapq >= mapq_cut (unique): 14101867 Read-1: 7051797 Read-2: 7050070 Reads map to '+': 7050954 Reads map to '-': 7050913 Non-splice reads: 9539632 Splice reads: 4562235 Reads mapped in proper pairs: 14097156 Proper-paired reads map to different chrom:0