#================================================== #All numbers are READ count #================================================== Total records: 83599310 QC failed: 0 Optical/PCR duplicate: 28446273 Non primary hits 4110586 Unmapped reads: 2799086 mapq < mapq_cut (non-unique): 1813821 mapq >= mapq_cut (unique): 46429544 Read-1: 23216541 Read-2: 23213003 Reads map to '+': 23214770 Reads map to '-': 23214774 Non-splice reads: 32613809 Splice reads: 13815735 Reads mapped in proper pairs: 46423600 Proper-paired reads map to different chrom:0